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Solibacillus

Solibacillus
Scientific classification
Domain:
Bacteria
Phylum:
Bacillota
Class:
Bacilli
Order:
Caryophanales
Family:
Caryophanaceae
Genus:
Solibacillus

Krishnamurthi 2009
Type species
Solibacillus silvestris
(Rheims et al. 1999) Krishnamurthi, Chakrabarti & Stackebrandt 2009
Species[1]

Solibacillus is a genus of Gram positive, rod shaped, spore-forming bacteria.

The first member of Solibacillus was first isolated in 1999, and was originally called Bacillus silvestris. However, further studies on B. silvestris found that the organism belonged in a separate genus. Solibacillus silvestris was proposed, referring to its original designation as a member of Bacillus, and the fact that the species was first isolated from soil.[2][3] Bacillus isronensis was later reclassified as Solibacillus isronensis.[4] S. isronensis was isolated from cryotubes that were used to collect air samples from high altitudes, and S. kalamii was found in an air filter from the International Space Station.[5]

In 2020, the family Planococcaceae was merged with the family Caryophanaceae due to nomenclature rules under the International Code of Nomenclature of Prokaryotes.[6] In addition, the family Caryophanaceae underwent several taxonomic changes to account for the large number of phylogenetically unrelated species that were misclassified.[6] Using comparative genomic analyses, the study identified several unique molecular markers (specifically conserved signature indels) could serve as a reliable means to distinguish genera such as Solibacillus within the family.[6]

Molecular Signatures

12 conserved signature indels (CSIs) were identified through genomic analyses for this genus in the following proteins: flagellar hook–basal body protein, aminodeoxychorismate lyase, VOC family protein, DNA topoisomerase IV subunit A, DegV family protein, helicase–exonuclease AddAB subunit AddB, multidrug resistance efflux transporter family protein, heme-dependent peroxidase, methionine ABC transporter ATP-binding protein, tRNA 4-thiouridine(8) synthase ThiI, and AAA family ATPase.[6] These CSIs provide a reliable molecular method for distinguishing Solibacillus species from other genera within the family Caryophanaceae and all other bacteria.[citation needed]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI)[7]

16S rRNA based LTP_10_2024[8][9][10] 120 marker proteins based GTDB 09-RS220[11][12][13]
Solibacillus

S. cecembensis (Reddy, Uttam & Shivaji 2008) Gupta & Patel 2020

Caryophanon

S. daqui Liang et al. 2023

S. isronensis (Shivaji et al. 2009) Mual et al. 2016

S. kalamii Checinska Sielaff et al. 2017

S. silvestris (Rheims et al. 1999) Krishnamurthi, Chakrabarti & Stackebrandt 2009

Solibacillus

S. cecembensis

S. faecavium Pallen 2024

"S. merdavium" Gilroy et al. 2021

See also

References

  1. ^ a b J.P. Euzéby. "Solibacillus". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2022-09-09.
  2. ^ Krishnamurthi S, Chakrabarti T, Stackebrandt E. Re-examination of the taxonomic position of Bacillus silvestris Rheims et al. 1999 and proposal to transfer it to Solibacillus gen. nov. as Solibacillus silvestris comb. nov. International Journal of Systematic and Evolutionary Microbiology. 2009 May 1;59(5):1054-8.
  3. ^ Rheims H, Frühling A, Schumann P, Rohde M, Stackebrandt E. Bacillus silvestris sp. nov., a new member of the genus Bacillus that contains lysine in its cell wall. International Journal of Systematic and Evolutionary Microbiology. 1999 Apr 1;49(2):795-802.
  4. ^ Mual P, Singh NK, Verma A, Schumann P, Krishnamurthi S, Dastager S, Mayilraj S. Reclassification of Bacillus isronensisShivaji et al. 2009 as Solibacillus isronensis comb. nov. and emended description of genus Solibacillus Krishnamurthi et al. 2009. International Journal of Systematic and Evolutionary Microbiology. 2016 May 1;66(5):2113-20.
  5. ^ Sielaff AC, Kumar RM, Pal D, Mayilraj S, Venkateswaran K. Solibacillus kalamii sp. nov., isolated from a high-efficiency particulate arrestance filter system used in the International Space Station. International Journal of Systematic and Evolutionary Microbiology. 2017 May 5;67(4):896-901.
  6. ^ a b c d Gupta, Radhey S.; Patel, Sudip (2020-01-14). "Robust Demarcation of the Family Caryophanaceae (Planococcaceae) and Its Different Genera Including Three Novel Genera Based on Phylogenomics and Highly Specific Molecular Signatures". Frontiers in Microbiology. 10: 2821. doi:10.3389/fmicb.2019.02821. ISSN 1664-302X. PMC 6971209. PMID 32010063.
  7. ^ Sayers; et al. "Solibacillus". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-09-09.
  8. ^ "The LTP". Retrieved 10 December 2024.
  9. ^ "LTP_all tree in newick format". Retrieved 10 December 2024.
  10. ^ "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
  11. ^ "GTDB release 09-RS220". Genome Taxonomy Database. Retrieved 10 May 2024.
  12. ^ "bac120_r220.sp_labels". Genome Taxonomy Database. Retrieved 10 May 2024.
  13. ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2024.
Quelle: http://en.wikipedia.org/wiki/Solibacillus