Alianza F.C. has had a total of 50 coaches in its history.

The first coach was Gregorio Bundio, who he was at the club from 1959 until 1960.

The majority of coaches Alianza have had have been Salvadorians. Of the 50 coaches to have managed Alianza, 19 have been Salvadorians and 31 foreigners. In some cases, the Salvadorian coaches have been former players of the club that agreed to take charge after the sacking of the regular coach that season.

The main nationalities of the coaches of Alianza barring Salvadorians have been Uruguayan (8 coaches), Argentina (8 coaches), and Chilean (4). The club has also had two Serbian coaches, 2 Brazilians, 2 Colombians, a Mexican, an Italian, a Paraguayan, and a Spanish.

• Only first-team competitive matches are counted.
• Statistics are updated up to 8 February 2024.

Table key

•   Player-coach (team player that assumed simultaneously the role of coach)
•   Caretaker coach (coach who assumed temporarily the job in the absence of the incumbent head coach or until a new head coach was hired)

List of Head Coaches of Alianza F.C. from when the club was formed:

Name	Nat.	From	To	Honours	Notes
Gregorio Bundio		1959	1960
TBD		1961	1962
Raúl "Che" Álvarez		1963	1963
TBD		1964	1965
Emilio Guardado		TBD	TBD
Hernán Carrasco Vivanco		1966	1967	2 Primera División (1965–66, 1966–67), 1 (1967 CONCACAF Champions' Cup)
Conrado Miranda		1967	1967
José Giuseppe Rossini		1969	1969
Manuel "Cuíco" Gómez		1969	1969
TBD		1970	1971
Conrado Miranda		1971	1971
Salvador Mariona		1972	April 1972
Victor Manuel Ochoa "Pipe"		May 1972	1972
Salvador Mariona		1973	1973
Hernán Carrasco Vivanco		December 1973	February 1974
Salvador Mariona/Raúl Magaña/Francisco Zamora (Interim)		February 1974	February 1974
Néstor Valdez Moraga		February 1974	December 1974
Ricardo Sepúlveda		January 1975	September 1975
Mario Rey		September 1975	1976
TBD		1977	1978
TBD		1978	1979
Raúl Magaña		1980	1980
TBD		1981	1981
Francisco Zamora		1982	1982
Salvador Mariona		1983	1983
Ricardo Tomasino		TBD	TBD
Mauricio Ernesto González		TBD	TBD
Juan Francisco Barraza		TBD	TBD
Alfredo "Baiza" Ruano		TBD	TBD
Armando Contreras Palma		TBD	TBD
TBD		1984	1984
Ricardo Mena Laguán		TBD	1985
Juan Quarterone		1985	1986
Ricardo Sepúlveda		1986	1987	1 Primera División (1986-1987)
Helio Rodríguez dos santos		1988	1988
Francisco Zamora		1988	1989
Hernán Carrasco Vivanco		1989	1990	1 Primera División (1989)
José Estanislao Malinowski		1991	1992
Hernán Carrasco Vivanco		1991	1992
Helio Rodriguez dos Santos		1993	1994
Nilton Rodarte		1993	1994
Gustavo Faral		1993	1994	1 Primera División (1993-1994)
Gregorio Bundio		February 1995	February 1995
Hernán Carrasco Vivanco		1995	November 1995
Jorge Aude		November 1995	June 1996
Didier Castro		June 1996	June 1996		1 game
Juan Carlos Masnik		August 1996	November 1997	1 Primera División (1996-1997),1 UNCAF Club Championship (1997).
Jose Mario Figueroa		November 1997	November 1997		1 game
Jose Mario Figueroa		November 1997	July 1998
Rubén Alonso		July 1998	April 1999	1 Primera División (Apertura 1998)
Milton Meléndez		April 1999	April 1999		1 game
Hernán Carrasco Vivanco		April 1999	November 1995
Reno Renucci		November 1999	1999
Manuel Alfredo Oberti		March 2000	June 2000
Jaime Rodríguez		July 2000	December 2000
Carlos Reyes		January 2001	April 2001
Juan Ramón Paredes		July 2001	June 2002	1 Primera División (Apertura 2001)
German Gutiérrez de Piñeres		July 2002	September 2002
Julio del Carmen Escobar Ortiz		July 2002	December 2002
Juan Quarterone		December 2002	June 2003
Henry Vanegas		July 2003	October 2003
Marcelo Javier Zuleta		October 2003	December 2003
Juan Martín Mujica		January 2004	December 2004	1 Primera División (Clausura 2004)
Juan Ramón Paredes		January 2005	June 2005
Richard Parra		July 2005	August 2005
Oscar del Solar		August 2005	December 2005
Odir Jaques		January 2006	February 2006
Oscar Emigdio Benítez		February 2006	June 2006
Miguel Mansilla		June 2006	October 2006
Nelson Brizuela		October 2006	July 2007
Pablo Centrone		July 2007	September 2008
Carlos Jurado		September 2008	February 2009
Carlos García Cantarero		February 2009	May 2009
Nelson Mauricio Ancheta		May 2009	October 2009
Miguel Ángel Soriano		October 2009	November 2009
Miloš Miljanić		November 2009	March 2011
Roberto Gamarra		March 2011	September 2011	1 Primera División (Clausura 2011)
Leonel Cárcamo		September 2011	September 2011
Vladan Vićević		September 2011	January 2012
Leonel Cárcamo		January 2012	February 2012
Juan Ramón Paredes		February 2012	April 2012
Ramiro Cepeda		May 2012	May 2013
Miloš Miljanić		May 2013	October 2013
Juan Andrés Sarulyte		October 2013	November 2013
Alejandro Curbelo		December 2013	October 2014
Ramiro Cepeda		October 2014	March 2015
Rubén Alonso		March 2015	February 2016	1 Primera División (Apertura 2015)
Milton Meléndez		February 2016	February 2016		1 game
Daniel Fernandez		February 2016	August 2016
Milton Meléndez		August 2016	December 2016
Jorge Rodríguez		January 2017	June 2019	2 Primera División (Apertura 2017, Clausura 2018)
Wilson Gutiérrez		June 2019	July 2020	1 Primera División (Apertura 2019)
Juan Cortés Diéguez		July 2020	December 2020
Milton Meléndez		December 2020	June 2022	3 Primera División (Apertura 2020, Apertura 2021, Clausura 2022)	[1]
Adonay Martinez		June 2022	November 2022
Eduardo Lara		November 2022	June 2023
Milton Meléndez		June 2023	December 2023	1 Primera División (2024 Clausura)
Jorge Rodríguez		December 2023	December 2024
TBD		December 2024	Present

Only managers who have won at least one trophy are mentioned.

Name	Period	Trophies
		Domestic			International
		PD	Cp	Other cups	CCC	UN
Hernán Carrasco Vivanco	1965-1968, 1989-1991	3	0	0	1	0
Rubén Alonso	1998, 2015 Apertura	2	0	0	0	0
Estanislao Malinowski	???	1	0	0	0	0
Gustavo Faral	1993–1994	1	0	0	0	0
Juan Carlos Masnik	1996–1997	1	0	0	0	1
Juan Ramón Paredes	2000–2001	1	0	0	0	0
Juan Martín Mujica	2004	1	0	0	0	0
Roberto Gamarra	2011	1	0	0	0	0
Jorge Rodriguez	2017, 2018	2	0	0	0	0
Wilson Gutiérrez	Apertura 2019	1	0	0	0	0
Milton Melendez	Apertura 2020, Apertura 2021, Clausura 2022, Clausura 2024	4	0	0	0	0