Bajrakli Mosque (also spelled Bayrakli ; bayrak is Turkish for "flag" and Bayrakli means "with flag"), or variations on that name, may refer to:

• Bajrakli Mosque, Belgrade, Serbia
• Bajrakli Mosque, Peja, Kosovo
• Bayrakli Mosque, Samokov, Bulgaria
• Bayrakli Mosque, Chios, Greece
• Bayrakli Mosque, Ioannina, Greece
• Bayrakli Mosque, Larissa, Greece