Plant ontology
 | |
| Content | |
|---|---|
| Description | The Plant Ontology |
| Data types captured | Anatomy and development of plants |
| Organisms | Viridiplantae |
| Contact | |
| Primary citation | Walls et al. (2012)[1] |
| Release date | 2002[2] |
| Access | |
| Data format | OBO and OWL |
| Website | http://plantontology.org |
| Download URL | http://purl.obolibrary.org/obo/po.owl |
| Sparql endpoint | http://sparql.hegroup.org/sparql |
| Miscellaneous | |
| License | CC BY 4.0 |
Plant ontology (PO) is a collection of ontologies developed by the Plant Ontology Consortium. These ontologies describe anatomical structures and growth and developmental stages across Viridiplantae.[2][3][4][5][6][7] The PO is intended for multiple applications, including genetics, genomics, phenomics, and development, taxonomy and systematics, semantic applications and education.[1][8]
Project Members
- Oregon State University
- New York Botanical Garden
- L. H. Bailey Hortorium at Cornell University
- Ensembl
- SoyBase
- SSWAP
- SGN
- Gramene
- The Arabidopsis Information Resource (TAIR)
- MaizeGDB
- University of Missouri at St. Louis
- Missouri Botanical Garden
See also
References
- ^ a b Walls, R. L.; Athreya, B.; Cooper, L.; Elser, J.; Gandolfo, M. A.; Jaiswal, P.; Mungall, C. J.; Preece, J.; Rensing, S.; Smith, B.; Stevenson, D. W. (2012). "Ontologies as integrative tools for plant science". American Journal of Botany. 99 (8): 1263–1275. doi:10.3732/ajb.1200222. PMC 3492881. PMID 22847540.
- ^ a b The Plant Ontology Consortium, C. (2002). "The Plant Ontology™ Consortium and Plant Ontologies". Comparative and Functional Genomics. 3 (2): 137–142. doi:10.1002/cfg.154. PMC 2447263. PMID 18628842.
- ^ Ilic, Katica (2008). Albert, Burger (ed.). Plant Structure Ontology (PSO) - A morphological and anatomical ontology of flowering plants. Springer. pp. 27–42. Retrieved August 22, 2012.
- ^ Avraham, S.; Tung, C. -W.; Ilic, K.; Jaiswal, P.; Kellogg, E. A.; McCouch, S.; Pujar, A.; Reiser, L.; Rhee, S. Y.; Sachs, M. M.; Schaeffer, M.; Stein, L.; Stevens, P.; Vincent, L.; Zapata, F.; Ware, D. (2007). "The Plant Ontology Database: A community resource for plant structure and developmental stages controlled vocabulary and annotations". Nucleic Acids Research. 36 (Database issue): D449 – D454. doi:10.1093/nar/gkm908. PMC 2238838. PMID 18194960.
- ^ Ilic, K.; Kellogg, E. A.; Jaiswal, P.; Zapata, F.; Stevens, P. F.; Vincent, L. P.; Avraham, S.; Reiser, L.; Pujar, A.; Sachs, M. M.; Whitman, N. T.; McCouch, S. R.; Schaeffer, M. L.; Ware, D. H.; Stein, L. D.; Rhee, S. Y. (2006). "The Plant Structure Ontology, a Unified Vocabulary of Anatomy and Morphology of a Flowering Plant". Plant Physiology. 143 (2): 587–599. doi:10.1104/pp.106.092825. PMC 1803752. PMID 17142475.
- ^ Pujar, A.; Jaiswal, P.; Kellogg, E. A.; Ilic, K.; Vincent, L.; Avraham, S.; Stevens, P.; Zapata, F.; Reiser, L.; Rhee, S. Y.; Sachs, M. M.; Schaeffer, M.; Stein, L.; Ware, D.; McCouch, S. (2006). "Whole-Plant Growth Stage Ontology for Angiosperms and Its Application in Plant Biology". Plant Physiology. 142 (2): 414–428. doi:10.1104/pp.106.085720. PMC 1586063. PMID 16905665.
- ^ Jaiswal, P.; Avraham, S.; Ilic, K.; Kellogg, E. A.; McCouch, S.; Pujar, A.; Reiser, L.; Rhee, S. Y.; Sachs, M. M.; Schaeffer, M.; Stein, L.; Stevens, P.; Vincent, L.; Ware, D.; Zapata, F. (2005). "Plant Ontology (PO): A Controlled Vocabulary of Plant Structures and Growth Stages". Comparative and Functional Genomics. 6 (7–8): 388–397. doi:10.1002/cfg.496. PMC 2447502. PMID 18629207.
- ^ "Information Overload in the Era of 'Big Data'". Science Daily. Retrieved 23 August 2012.
External links