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File:Summary of SAGE.svg

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Summary

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English: Within the organisms, genes are transcribed and spliced (in eukaryotes) to produce mature mRNA transcripts (red). The mRNA is extracted from the organism and reverse transcriptase is used to copy the mRNA into stable ds-cDNA (blue). In SAGE, the ds-cDNA is digested by restriction enzymes (at location ‘X’ and ‘X’+11) to produce 11-nucleotide ‘digitag’ fragments. These digitags are concatenated and sequences using long-read sanger sequencing (different shades of blue indicate digitags from different genes). The sequences are deconvoluted to find the occurrence number of each digitag. Digitag can be used to report on transcription of the gene that the digitag came from is known.[1]
Date
Source Own work
Author Thomas Shafee
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Also in series:

  • RNA Microarray
    RNA Microarray
  • RNA-Seq
    RNA-Seq
  • SAGE
    SAGE

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  1. ↑ Lowe, Rohan (2017-05-18). "Transcriptomics technologies". PLOS Computational Biology 13 (5): e1005457. DOI:10.1371/journal.pcbi.1005457. PMID 28545146. PMC: PMC5436640. ISSN 1553-7358.

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Serial analysis of gene expression

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author name string: Thomas Shafee
URL: https://commons.wikimedia.org/wiki/user:Evolution_and_evolvability
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Date/TimeThumbnailDimensionsUserComment
current12:21, 13 February 2017Thumbnail for version as of 12:21, 13 February 2017938 × 756 (180 KB)Evolution and evolvabilitytext as paths to avoid artefacts
10:48, 13 February 2017Thumbnail for version as of 10:48, 13 February 2017938 × 756 (104 KB)Evolution and evolvabilityupdate sequence text to 'sans-serif' open font for more robust rendering
05:27, 7 October 2016Thumbnail for version as of 05:27, 7 October 2016938 × 756 (104 KB)Evolution and evolvabilityce
05:23, 7 October 2016Thumbnail for version as of 05:23, 7 October 2016938 × 756 (102 KB)Evolution and evolvabilityce
05:16, 7 October 2016Thumbnail for version as of 05:16, 7 October 2016938 × 756 (104 KB)Evolution and evolvabilitydigitag-->tag
05:08, 5 October 2016Thumbnail for version as of 05:08, 5 October 20161,020 × 821 (106 KB)Evolution and evolvabilityUser created page with UploadWizard

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